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USER GUIDE
Fragment Library Preparation Using the
AB Library Builder
System
5500 Series SOLiD
Systems
Publication Part Number 4460965 Rev. A
Revision Date March 2011
design experiment
X prepare libraries
prepare beads
run sequencer
analyze data
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Resumo do Conteúdo

Página 1 - AB Library Builder

USER GUIDEFragment Library Preparation Using theAB Library Builder™ System5500 Series SOLiD™ SystemsPublication Part Number 4460965 Rev. ARevision Dat

Página 2

10Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter1 About the ProductsProduct inform

Página 3 - Contents

11Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter1 About the ProductsKit contents a

Página 4

12Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter1 About the ProductsKit contents a

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13Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideCHAPTER2 Prepare to Build the LibraryWor

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14Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibraryQuan

Página 7 - About This Guide

15Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibraryShea

Página 8

16Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibraryShea

Página 9 - About the Products

17Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 10 - How to use the

18Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 11 - Kit contents

19Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 12 - Chapter1 About the Products

For Research Use Only. Not intended for any animal or human therapeutic or diagnostic use.This user guide is the proprietary material of Applied Biosy

Página 13 - Procedural guidelines

20Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 14 - Quantitate the DNA

21Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 15

22Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 16 - 5. Remove the sheared DNA:

23Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 17 - System for size-selected or

24Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 18 - Insert or change

25Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 19 - Load the racks and

26Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter2 Prepare to Build the LibrarySet

Página 20 - Load the cartridge rack

27Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideCHAPTER3 Build the libraryWorkflowFor ad

Página 21

28Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter3 Build the librarySet up for a ne

Página 22

29Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideCHAPTER4 Nick-Translate the Library with

Página 23 - Insert the racks

Contents3Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User Guide About This Guide . . . . . . . .

Página 24

30Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter4 Nick-Translate the Library with

Página 25 - Insert the tip and tube rack

31Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter4 Nick-Translate the Library with

Página 26

32Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter4 Nick-Translate the Library with

Página 27 - Build the library

33Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter4 Nick-Translate the Library with

Página 28 - Set up for a new run

34Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter4 Nick-Translate the Library with

Página 29 - Optional Amplification

35Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideCHAPTER5 TroubleshootingFor symptoms oth

Página 30 - Purify the nick

36Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter5 TroubleshootingRun stops after a

Página 31 - Prepare the

37Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter5 Troubleshooting After the automa

Página 32

38Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideChapter5 TroubleshootingInstrument error

Página 33

39Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAAPPENDIXA Ordering InformationThis appe

Página 34

4Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideContentsAPPENDIX A Ordering Information .

Página 35 - Troubleshooting

40Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixA Ordering InformationRequired Ap

Página 36 - Chapter5 Troubleshooting

41Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixA Ordering InformationRequired Ap

Página 37

42Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixA Ordering InformationRequired eq

Página 38 - Instrument error codes

43Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixA Ordering InformationRequired eq

Página 39 - Ordering Information

44Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixA Ordering InformationOptional eq

Página 40

45Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixA Ordering InformationRequired co

Página 41

46Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixA Ordering InformationOptional co

Página 42 - Required equipment

47Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideBAPPENDIXB Supplemental ProceduresThis a

Página 43

48Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental ProceduresAB Libra

Página 44 - Replacement parts

49Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental ProceduresAB Libra

Página 45 - Required consumables

5Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideContents Glossary . . . . . . . . . . . . .

Página 46 - Optional consumables

50Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental ProceduresAB Libra

Página 47 - Supplemental Procedures

51Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental Procedures(Optiona

Página 48 - System operation

52Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental Procedures(Optiona

Página 49

53Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental Procedures(Optiona

Página 50 - Manage the run

54Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental Procedures(Optiona

Página 51 - Size-select the

55Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental ProceduresQuantita

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56Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental ProceduresQuantita

Página 53

57Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental ProceduresQuantita

Página 54 - Sample wells

58Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixB Supplemental ProceduresQuantita

Página 55 - Spectrophotometer

59Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideCAPPENDIXC Supplemental BackgroundInform

Página 56 - 2. Open the NanoDrop

6Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideContents

Página 57

60Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixC Supplemental Background Informa

Página 58

61Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixC Supplemental Background Informa

Página 59 - Information

62Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixC Supplemental Background Informa

Página 60 - Library molecule ligated

63Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideDAPPENDIXD Library ConstructionOligonucl

Página 61

64Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

Página 62 - Guide (Part no. 4456991)

65Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

Página 63 - Oligonucleotide Sequences

66Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

Página 64

67Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

Página 65

68Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

Página 66

69Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

Página 67

7Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User Guide About This GuideSafety informationNote: For

Página 68

70Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

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71Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

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72Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixD Library Construction Oligonucle

Página 71

73Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideEAPPENDIXE Checklist and workflow tracki

Página 72

74Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixE Checklist and workflow tracking

Página 73 - System Kit

75Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixE Checklist and workflow tracking

Página 74

76Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixE Checklist and workflow tracking

Página 75

77Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideFAPPENDIXF SafetyThis appendix covers:

Página 76

78Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixF SafetySDSsFChemical safety guid

Página 77 - Safety

79Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixF SafetyChemical waste safetyF WA

Página 78 - Chemical waste safety

8Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAbout This GuideSafety informationSDSs The S

Página 79 - Waste disposal

80Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideAppendixF SafetyBiological hazard safetyF

Página 80 - Biological hazard safety

81Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User Guide Documentation and SupportRelated documenta

Página 81 - Documentation and Support

82Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideDocumentation and SupportObtaining support

Página 82

83Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User Guide Glossarybarcode A short, unique sequence t

Página 83 - Glossary

84Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideGlossaryP1-T AdaptorA T-tailed double-stran

Página 84 - Standard Adaptor

85Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User Guide IndexAAB Library Builder Systemrunning 27A

Página 85

86Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideIndexNNanoDrop® ND-1000 Spectrophotometer 5

Página 86

4460965AHeadquarters5791 Van Allen Way | Carlsbad, CA 92008 USA | Phone +1 760 603 7200 | Toll Free in USA 800 955 6288For support visit www.app

Página 87 - Headquarters

9Fragment Library Preparation Using the AB Library Builder™ System: 5500 Series SOLiD™ Systems User GuideCHAPTER1 About the ProductsNote: For comp

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